title={Spatial {C++} library -- Library of generic, k-d tree multi-dimensional containers},
year={2017},
title={Spatial {C++} library: Library of generic, k-d tree multi-dimensional containers},
url={https://sourceforge.net/projects/spatial/},
year={2017},
}
@InProceedings{cuthill:1969reducing,
@@ -190,35 +190,35 @@
url={http://vcg.isti.cnr.it/vcglib/},
}
@book{VTK,
title={The Visualization Toolkit: An Object-oriented Approach to 3D Graphics},
@Book{VTK,
author={Schroeder, W. and Martin, K. and Lorensen, B.},
isbn={9781930934191},
year={2006},
publisher={Kitware},
title={The {Visualization Toolkit}: An object-oriented approach to {3D} graphics},
year={2006},
isbn={9781930934191},
}
@InBook{ahrens:2005paraview,
author={Ahrens, James and Geveci, Berk and Law, Charles},
booktitle={Visualization Handbook},
chapter={36},
editor={Charles D. Hansen and Chris R. Johnson},
pages={717--731},
publisher={Butterworth-Heinemann},
title={{ParaView}: An end-user tool for large-data visualization},
year={2005},
address={Burlington},
chapter={36},
editor={Charles D. Hansen and Chris R. Johnson},
isbn={978-0-12-387582-2},
pages={717-731},
booktitle={Visualization Handbook},
doi={10.1016/b978-012387582-2/50038-1},
}
@InBook{HPV:VisIt,
author={Hank Childs and Eric Brugger and Brad Whitlock and Jeremy Meredith and Sean Ahern and David Pugmire and Kathleen Biagas and Mark Miller and Cyrus Harrison and Gunther H. Weber and Hari Krishnan and Thomas Fogal and Allen Sanderson and Christoph Garth and E. Wes Bethel and David Camp and Oliver R\"{u}bel and Marc Durant and Jean M. Favre and Paul Navr\'{a}til},
title={{MPI}: A Message-Passing Interface Standard Version 3.1},
title={{MPI}: A {Message-Passing Interface} standard version 3.1},
author={{Message Passing Interface Forum}},
month=Jun,
year={2015},
@@ -557,28 +557,28 @@
url={https://www.comsol.com/},
}
@article{askar2021,
title={Exploring the Impacts of Source Condition Uncertainties on Far-Field Brine Leakage Plume Predictions in Geologic Storage of {CO2}: Integrating Intermediate-Scale Laboratory Testing With Numerical Modeling},
author={Askar, Ahmad H and Illangasekare, Tissa H and Trautz, Andrew and Solovský, Jakub and Zhang, Ye and Fučík, Radek},
@Article{askar2021,
author={Askar, Ahmad H. and Illangasekare, Tissa H. and Trautz, Andrew and Solovský, Jakub and Zhang, Ye and Fučík, Radek},
journal={Water Resources Research},
volume={57},
title={Exploring the impacts of source condition uncertainties on far-field brine leakage plume predictions in geologic storage of {CO2}: integrating intermediate-scale laboratory testing with numerical modeling},
year={2021},
number={9},
pages={e2021WR029679},
year={2021},
publisher={Wiley Online Library},
volume={57},
doi={10.1029/2021WR029679},
publisher={Wiley Online Library},
}
@article{chan1983,
title={Algorithms for computing the sample variance: Analysis and recommendations},
author={Chan, Tony F and Golub, Gene H and LeVeque, Randall J},
@Article{chan1983,
author={Chan, Tony F. and Golub, Gene H. and LeVeque, Randall J.},
journal={The American Statistician},
volume={37},
title={Algorithms for computing the sample variance: Analysis and recommendations},
year={1983},
number={3},
pages={242--247},
year={1983},
publisher={Taylor \& Francis},
volume={37},
doi={10.1080/00031305.1983.10483115},
publisher={Taylor \& Francis},
}
@Article{davidson2007,
@@ -604,16 +604,16 @@
doi={10.1016/j.ijheatfluidflow.2006.02.025},
}
@article{desjardins1999,
title={Low Mach number limit of viscous compressible flows in the whole space},
@Article{desjardins1999,
author={Desjardins, Benoit and Grenier, Emmanuel},
journal={Proceedings of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences},
volume={455},
title={Low {Mach} number limit of viscous compressible flows in the whole space},
year={1999},
number={1986},
pages={2271--2279},
year={1999},
publisher={The Royal Society},
volume={455},
doi={10.1098/rspa.1999.0403},
publisher={The Royal Society},
}
@article{eichler2021a,
@@ -685,28 +685,28 @@
doi={10.1016/j.jcp.2017.07.004},
}
@article{kang2013,
title={The effect of lattice models within the lattice {Boltzmann} method in the simulation of wall-bounded turbulent flows},
author={Kang, Shin K and Hassan, Yassin A},
@Article{kang2013,
author={Kang, Shin K. and Hassan, Yassin A.},
journal={Journal of Computational Physics},
volume={232},
title={The effect of lattice models within the lattice {Boltzmann} method in the simulation of wall-bounded turbulent flows},
year={2013},
number={1},
pages={100--117},
year={2013},
publisher={Elsevier},
volume={232},
doi={10.1016/j.jcp.2012.07.023},
publisher={Elsevier},
}
@article{kees2008,
title={Locally conservative, stabilized finite element methods for variably saturated flow},
author={Kees, Christopher E and Farthing, Matthew W and Dawson, Clint N},
@Article{kees2008,
author={Kees, Christopher E. and Farthing, Matthew W. and Dawson, Clint N.},
journal={Computer Methods in Applied Mechanics and Engineering},
volume={197},
title={Locally conservative, stabilized finite element methods for variably saturated flow},
year={2008},
number={51-52},
pages={4610--4625},
year={2008},
publisher={Elsevier},
volume={197},
doi={10.1016/j.cma.2008.06.005},
publisher={Elsevier},
}
@article{kumar2018,
@@ -723,41 +723,41 @@
## velocity post-processing schemes
@article{larson2004,
title={A conservative flux for the continuous {Galerkin} method based on discontinuous enrichment},
author={Larson, Mats G and Niklasson, A Jonas},
@Article{larson2004,
author={Larson, Mats G. and Niklasson, A. Jonas},
journal={Calcolo},
volume={41},
title={A conservative flux for the continuous {Galerkin} method based on discontinuous enrichment},
year={2004},
number={2},
pages={65--76},
year={2004},
publisher={Springer},
volume={41},
doi={10.1007/BF02637255},
publisher={Springer},
}
@article{ling1974,
title={Comparison of several algorithms for computing sample means and variances},
author={Ling, Robert F},
@Article{ling1974,
author={Ling, Robert F.},
journal={Journal of the American Statistical Association},
volume={69},
title={Comparison of several algorithms for computing sample means and variances},
year={1974},
number={348},
pages={859--866},
year={1974},
publisher={Taylor \& Francis},
volume={69},
doi={10.1080/01621459.1974.10480219},
publisher={Taylor \& Francis},
}
% incompressible limit of the NSE
@article{lions1998,
title={Incompressible limit for a viscous compressible fluid},
author={Lions, P-L and Masmoudi, Nader},
@Article{lions1998,
author={Lions, P.-L. and Masmoudi, Nader},
journal={Journal de math{\'e}matiques pures et appliqu{\'e}es},
volume={77},
title={Incompressible limit for a viscous compressible fluid},
year={1998},
number={6},
pages={585--627},
year={1998},
volume={77},
doi={10.1016/S0021-7824(98)80139-6},
publisher={Elsevier},
doi={10.1016/S0021-7824(98)80139-6}
}
@article{massman1998,
@@ -784,91 +784,91 @@
}
# MHFEM/NumDwarf applications
@article{solovsky2020,
title={Dimensional effects of inter-phase mass transfer on attenuation of structurally trapped gaseous carbon dioxide in shallow aquifers},
author={Solovský, Jakub and Fučík, Radek and Plampin, Michelle R and Illangasekare, Tissa H and Mikyška, Jiří},
@Article{solovsky2020,
author={Solovský, Jakub and Fučík, Radek and Plampin, Michelle R. and Illangasekare, Tissa H. and Mikyška, Jiří},
journal={Journal of Computational Physics},
volume={405},
pages={109178},
title={Dimensional effects of inter-phase mass transfer on attenuation of structurally trapped gaseous carbon dioxide in shallow aquifers},
year={2020},
publisher={Elsevier},
pages={109178},
volume={405},
doi={10.1016/j.jcp.2019.109178},
publisher={Elsevier},
}
@article{sun2006,
title={Projections of velocity data for the compatibility with transport},
author={Sun, Shuyu and Wheeler, Mary F},
@Article{sun2006,
author={Sun, Shuyu and Wheeler, Mary F.},
journal={Computer Methods in Applied Mechanics and Engineering},
volume={195},
title={Projections of velocity data for the compatibility with transport},
year={2006},
number={7-8},
pages={653--673},
year={2006},
publisher={Elsevier},
volume={195},
doi={10.1016/j.cma.2005.02.011},
publisher={Elsevier},
}
## Andrew's wind tunnel papers
@article{trautz2017role,
title={Role of co-occurring competition and facilitation in plant spacing hydrodynamics in water-limited environments},
author={Trautz, Andrew C and Illangasekare, Tissa H and Rodriguez-Iturbe, Ignacio},
@Article{trautz2017role,
author={Trautz, Andrew C. and Illangasekare, Tissa H. and Rodriguez-Iturbe, Ignacio},
journal={Proceedings of the National Academy of Sciences},
volume={114},
title={Role of co-occurring competition and facilitation in plant spacing hydrodynamics in water-limited environments},
year={2017},
number={35},
pages={9379--9384},
year={2017},
publisher={National Acad Sciences},
volume={114},
doi={10.1073/pnas.1706046114},
publisher={National Acad Sciences},
}
@article{trautz2017development,
title={Development of an experimental approach to study coupled soil-plant-atmosphere processes using plant analogs},
author={Trautz, Andrew C and Illangasekare, Tissa H and Rodriguez-Iturbe, Ignacio and Heck, Katharina and Helmig, Rainer},
@Article{trautz2017development,
author={Trautz, Andrew C. and Illangasekare, Tissa H. and Rodriguez-Iturbe, Ignacio and Heck, Katharina and Helmig, Rainer},
journal={Water Resources Research},
volume={53},
title={Development of an experimental approach to study coupled soil-plant-atmosphere processes using plant analogs},
year={2017},
number={4},
pages={3319--3340},
year={2017},
publisher={Wiley Online Library},
volume={53},
doi={10.1002/2016WR019884},
publisher={Wiley Online Library},
}
@article{trautz2018experimental,
title={Experimental testing scale considerations for the investigation of bare-soil evaporation dynamics in the presence of sustained above-ground airflow},
author={Trautz, Andrew C and Illangasekare, Tissa H and Howington, Stacy},
@Article{trautz2018experimental,
author={Trautz, Andrew C. and Illangasekare, Tissa H. and Howington, Stacy},
journal={Water Resources Research},
volume={54},
title={Experimental testing scale considerations for the investigation of bare-soil evaporation dynamics in the presence of sustained above-ground airflow},
year={2018},
number={11},
pages={8963--8982},
year={2018},
publisher={Wiley Online Library},
volume={54},
doi={10.1029/2018WR023102},
publisher={Wiley Online Library},
}
@article{trautz2019sensitivity,
title={Sensitivity of a continuum-scale porous media heat and mass transfer model to the spatial-discretization length-scale of applied atmospheric forcing data},
author={Trautz, Andrew C and Illangasekare, Tissa H and Howington, Stacy and Cihan, Abdullah},
@Article{trautz2019sensitivity,
author={Trautz, Andrew C. and Illangasekare, Tissa H. and Howington, Stacy and Cihan, Abdullah},
journal={Water Resources Research},
volume={55},
title={Sensitivity of a continuum-scale porous media heat and mass transfer model to the spatial-discretization length-scale of applied atmospheric forcing data},
year={2019},
number={4},
pages={3520--3540},
year={2019},
publisher={Wiley Online Library},
volume={55},
doi={10.1029/2018WR023923},
publisher={Wiley Online Library},
}
@article{welford1962,
title={Note on a method for calculating corrected sums of squares and products},
author={Welford, BP},
@Article{welford1962,
author={Welford, B. P.},
journal={Technometrics},
volume={4},
title={Note on a method for calculating corrected sums of squares and products},
year={1962},
number={3},
pages={419--420},
year={1962},
publisher={Taylor \& Francis},
volume={4},
doi={10.1080/00401706.1962.10490022},
publisher={Taylor \& Francis},
}
@article{wittmann2013,
@@ -883,16 +883,16 @@
}
% flow regimes in different roughness configurations
@article{wolfe1993,
title={The protective role of sparse vegetation in wind erosion},
author={Wolfe, Stephen A and Nickling, William G},
@Article{wolfe1993,
author={Wolfe, Stephen A. and Nickling, William G.},
journal={Progress in physical geography},
volume={17},
title={The protective role of sparse vegetation in wind erosion},
author={Bird, R. Byron and Stewart, Warren E. and Lightfoot, Edwin N.},
publisher={John Wiley \& Sons, Inc.},
title={Transport phenomena},
year={2002},
edition={Second},
author={Bird, R Byron and Stewart, Warren E and Lightfoot, Edwin N},
isbn={0471410772},
year={2002},
publisher={John Wiley \& Sons, Inc.},
doi={10.1115/1.1424298},
}
## MHFEM citations
@book{brezzi:1991mixed,
title={Mixed and hybrid finite elements methods},
@Book{brezzi:1991mixed,
author={Brezzi, Franco and Fortin, Michel},
publisher={Springer--Verlag},
title={Mixed and hybrid finite elements methods},
year={1991},
isbn={978-1-4612-7824-5},
series={Springer series in computational mathematics},
year={1991},
publisher={Springer-Verlag},
doi={10.1007/978-1-4612-3172-1},
}
## LBM citations
@book{kruger:2017lattice,
title={The Lattice {Boltzmann} Method},
@Book{kruger:2017lattice,
author={Kr{\"u}ger, Timm and Kusumaatmaja, Halim and Kuzmin, Alexandr and Shardt, Orest and Silva, Goncalo and Viggen, Erlend Magnus},
year={2017},
publisher={Springer},
title={The lattice {Boltzmann} method},
year={2017},
doi={10.1007/978-3-319-44649-3},
}
% citation for the 1/7-th power law
@book{white2005,
title={Viscous Fluid Flow},
isbn={978-0072402315},
author={White, Frank M},
year={2005},
@Book{white2005,
author={White, Frank M.},
publisher={McGraw-Hill, New York},
title={Viscous fluid flow},
year={2005},
isbn={978-0072402315},
}
@Manual{ansys-fluent:2009,
title={ANSYS Fluent 12.0 Documentation},
title={{ANSYS Fluent} 12.0 documentation},
author={{ANSYS Inc.}},
organization={ANSYS Inc.},
year={2009},
@@ -960,7 +960,7 @@
}
@InProceedings{bastian:2006DUNE,
author={Bastian, Peter and Blatt, Markus and Engwer, Christian and Dedner, Andreas and Kl{\"o}fkorn, Robert and Kuttanikkad, Sreejith P and Ohlberger, Mario and Sander, Oliver},
author={Bastian, Peter and Blatt, Markus and Engwer, Christian and Dedner, Andreas and Kl{\"o}fkorn, Robert and Kuttanikkad, Sreejith P. and Ohlberger, Mario and Sander, Oliver},
booktitle={Proceedings of the 19th Symposium on Simulation Technique},
title={The distributed and unified numerics environment ({DUNE})},
