Commit 0e0f1c67 authored by Jakub Klinkovský's avatar Jakub Klinkovský
Browse files

doc: update examples

parent 55fa42fb

README.md

+3 −0
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@@ -18,6 +18,9 @@ User authentication is done by _public-key cryptography_ using the key establish 
After a successful login, a short information message about the system will be displayed.

You can also follow the documentation below to find more details.



The cluster runs on Arch Linux and should be fully equipped for common scientific computations.

If you need any additional software to be installed, please ask the administrator.



## Documentation



- [Hardware overview](./doc/hardware-overview.md)

doc/jobs.md

+10 −18
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@@ -25,12 +25,9 @@ Not many options are needed for a basic serial job: 
```bash

#!/bin/bash



# job name (default is the name of this file)

#SBATCH --job-name=example

# file name for stdout/stderr (%x will be replaced with the job name, %j with the jobid)

#SBATCH --output=log.%x.job_%j

# maximum wall time allocated for the job (D-H:MM:SS)

#SBATCH --time=0:01:00

#SBATCH --job-name=example      # job name (default is the name of this file)

#SBATCH --output=log.%x.job_%j  # file name for stdout/stderr (%x will be replaced with the job name, %j with the jobid)

#SBATCH --time=0:01:00          # maximum wall time allocated for the job (D-H:MM:SS)



#SBATCH --partition=gpXY        # partition/queue name for the job submission

#SBATCH --ntasks=1              # number of tasks/processes
@@ -141,12 +138,9 @@ This can be achieved by exporting the `OMP_NUM_THREADS` according to the Slurm c 
```bash

#!/bin/bash



# job name (default is the name of this file)

#SBATCH --job-name=example-openmp

# file name for stdout/stderr (%x will be replaced with the job name, %j with the jobid)

#SBATCH --output=log.%x.job_%j

# maximum wall time allocated for the job (D-H:MM:SS)

#SBATCH --time=0:01:00

#SBATCH --job-name=example-omp  # job name (default is the name of this file)

#SBATCH --output=log.%x.job_%j  # file name for stdout/stderr (%x will be replaced with the job name, %j with the jobid)

#SBATCH --time=0:01:00          # maximum wall time allocated for the job (D-H:MM:SS)



#SBATCH --partition=gpXY        # partition/queue name for the job submission

#SBATCH --ntasks=1              # number of tasks/processes
@@ -178,12 +172,9 @@ For example: 
```bash

#!/bin/bash



# job name (default is the name of this file)

#SBATCH --job-name=example-mpi

# file name for stdout/stderr (%x will be replaced with the job name, %j with the jobid)

#SBATCH --output=log.%x.job_%j

# maximum wall time allocated for the job (D-H:MM:SS)

#SBATCH --time=0:01:00

#SBATCH --job-name=example-mpi  # job name (default is the name of this file)

#SBATCH --output=log.%x.job_%j  # file name for stdout/stderr (%x will be replaced with the job name, %j with the jobid)

#SBATCH --time=0:01:00          # maximum wall time allocated for the job (D-H:MM:SS)



#SBATCH --partition=gpXY        # partition/queue name for the job submission
@@ -219,4 +210,5 @@ TODO: 
- monitoring jobs - https://hpc.nih.gov/docs/userguide.html#monitor

- deleting jobs - https://hpc.nih.gov/docs/userguide.html#delete

- job states - https://hpc.nih.gov/docs/userguide.html#states

  `sacct --starttime "now-1weeks"`

- modifying jobs after submission - https://hpc.nih.gov/docs/userguide.html#modify_job