From 20b81c7ad5af3b14fcd24e2a663fa575018a1e2a Mon Sep 17 00:00:00 2001
From: Tomas Oberhuber <tomas.oberhuber@fjfi.cvut.cz>
Date: Thu, 20 Mar 2014 17:40:35 +0100
Subject: [PATCH] Debugging the mesh I/O.
---
.cproject | 997 ++++++++---------------------
src/mesh/CMakeLists.txt | 1 +
src/mesh/tnlMeshInitializer.h | 22 +-
src/mesh/tnlMeshIntegrityChecker.h | 30 +
src/mesh/tnlMeshReaderNetgen.h | 8 +-
src/mesh/tnlMeshWriterVTKLegacy.h | 75 +++
tools/src/tnl-mesh-convert.h | 35 +-
7 files changed, 412 insertions(+), 756 deletions(-)
create mode 100644 src/mesh/tnlMeshIntegrityChecker.h
create mode 100644 src/mesh/tnlMeshWriterVTKLegacy.h
diff --git a/.cproject b/.cproject
index 1969982fcb..98e60aaa91 100644
--- a/.cproject
+++ b/.cproject
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@@ -1983,4 +1236,254 @@
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</storageModule>
<storageModule moduleId="org.eclipse.cdt.core.LanguageSettingsProviders"/>
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+ <buildOutputProvider>
+ <openAction enabled="true" filePath=""/>
+ <parser enabled="true"/>
+ </buildOutputProvider>
+ <scannerInfoProvider id="makefileGenerator">
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diff --git a/src/mesh/CMakeLists.txt b/src/mesh/CMakeLists.txt
index 157f3c4586..e13bc27a0d 100755
--- a/src/mesh/CMakeLists.txt
+++ b/src/mesh/CMakeLists.txt
@@ -15,6 +15,7 @@ SET( headers tnlGrid.h
tnlMeshReaderNetgen.h
tnlMeshWriterNetgen.h
tnlMeshInitializer.h
+ tnlMeshIntegrityChecker.h
tnlMeshEntityInitializer.h
tnlMeshSuperentityInitializerLayer.h )
diff --git a/src/mesh/tnlMeshInitializer.h b/src/mesh/tnlMeshInitializer.h
index 0cee8179ed..9ae0812abd 100644
--- a/src/mesh/tnlMeshInitializer.h
+++ b/src/mesh/tnlMeshInitializer.h
@@ -46,6 +46,15 @@ class tnlMeshInitializer
public:
+ tnlMeshInitializer()
+ : verbose( false )
+ {}
+
+ void setVerbose( bool verbose )
+ {
+ this->verbose = verbose;
+ }
+
bool initMesh( MeshType& mesh )
{
//cout << "======= Starting mesh initiation ========" << endl;
@@ -53,13 +62,17 @@ class tnlMeshInitializer
if( ! this->checkCells() )
return false;
//cout << "========= Creating entities =============" << endl;
- this->createEntitiesFromCells();
+ this->createEntitiesFromCells( this->verbose );
this->createEntityInitializers();
//cout << "====== Initiating entities ==============" << endl;
this->initEntities( *this );
//cout << "Mesh initiation done..." << endl;
return true;
}
+
+ protected:
+
+ bool verbose;
};
template< typename ConfigTag >
@@ -109,7 +122,7 @@ class tnlMeshInitializerLayer< ConfigTag,
return true;
}
- void createEntitiesFromCells()
+ void createEntitiesFromCells( bool verbose )
{
//cout << " Creating entities with " << DimensionsTraits::value << " dimensions..." << endl;
cellInitializerContainer.setSize( this->getMesh().getNumberOfCells() );
@@ -117,12 +130,15 @@ class tnlMeshInitializerLayer< ConfigTag,
cell < this->getMesh().getNumberOfCells();
cell++ )
{
- //cout << " Creating the cell number " << cell << endl;
+ if( verbose )
+ cout << " Creating the cell number " << cell << " \r " << flush;
CellInitializerType& cellInitializer = cellInitializerContainer[ cell ];
cellInitializer.init( this->getMesh().getCell( cell ), cell );
BaseType::createEntitiesFromCells( cellInitializer );
}
+ if( verbose )
+ cout << endl;
}
diff --git a/src/mesh/tnlMeshIntegrityChecker.h b/src/mesh/tnlMeshIntegrityChecker.h
new file mode 100644
index 0000000000..5b215ee5e1
--- /dev/null
+++ b/src/mesh/tnlMeshIntegrityChecker.h
@@ -0,0 +1,30 @@
+/***************************************************************************
+ tnlMeshIntegrityChecker.h - description
+ -------------------
+ begin : Mar 20, 2014
+ copyright : (C) 2014 by Tomas Oberhuber
+ email : tomas.oberhuber@fjfi.cvut.cz
+ ***************************************************************************/
+
+/***************************************************************************
+ * *
+ * This program is free software; you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation; either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ ***************************************************************************/
+
+#ifndef TNLMESHINTEGRITYCHECKER_H_
+#define TNLMESHINTEGRITYCHECKER_H_
+
+#include<mesh/tnlMesh.h>
+
+template< typename MeshType >
+class tnlMeshIntegrityChecker
+{
+
+};
+
+
+#endif /* TNLMESHINTEGRITYCHECKER_H_ */
diff --git a/src/mesh/tnlMeshReaderNetgen.h b/src/mesh/tnlMeshReaderNetgen.h
index 10d1e4d3e6..03c652fbb9 100644
--- a/src/mesh/tnlMeshReaderNetgen.h
+++ b/src/mesh/tnlMeshReaderNetgen.h
@@ -135,11 +135,14 @@ class tnlMeshReaderNetgen
*/
typedef typename MeshType::template EntitiesTraits< dimensions >::GlobalIndexType CellIndexType;
if( ! inputFile )
+ {
+ cerr << "I cannot read the mesh cells." << endl;
return false;
+ }
getline( inputFile, line );
iss.str( line );
- CellIndexType numberOfCells;
- iss >> numberOfCells;
+ CellIndexType numberOfCells=atoi( line.data() );
+ //iss >> numberOfCells; // TODO: I do not know why this does not work
if( ! mesh.template setNumberOfEntities< dimensions >( numberOfCells ) )
{
cerr << "I am not able to allocate enough memory for " << numberOfCells << " cells." << endl;
@@ -158,7 +161,6 @@ class tnlMeshReaderNetgen
iss >> vertexIdx;
mesh.template getEntity< dimensions >( i ).setVertexIndex( cellVertex, vertexIdx );
}
- cout << endl;
if( verbose )
cout << numberOfCells << " cells expected ... " << i+1 << "/" << numberOfCells << " \r" << flush;
}
diff --git a/src/mesh/tnlMeshWriterVTKLegacy.h b/src/mesh/tnlMeshWriterVTKLegacy.h
new file mode 100644
index 0000000000..60fae004e2
--- /dev/null
+++ b/src/mesh/tnlMeshWriterVTKLegacy.h
@@ -0,0 +1,75 @@
+/***************************************************************************
+ tnlMeshWriterVTKLegacy.h - description
+ -------------------
+ begin : Mar 20, 2014
+ copyright : (C) 2014 by Tomas Oberhuber
+ email : tomas.oberhuber@fjfi.cvut.cz
+ ***************************************************************************/
+
+/***************************************************************************
+ * *
+ * This program is free software; you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation; either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ ***************************************************************************/
+
+
+#ifndef TNLMESHWRITERVTKLEGACY_H_
+#define TNLMESHWRITERVTKLEGACY_H_
+
+#include <fstream>
+#include <istream>
+#include <sstream>
+#include <iomanip>
+
+using namespace std;
+
+class tnlMeshWriterVTKLegacy
+{
+ public:
+
+ template< typename MeshType >
+ static bool writeMesh( const tnlString& fileName,
+ MeshType& mesh,
+ bool verbose )
+ {
+ if( MeshType::dimensions > 3 )
+ {
+ cerr << "You try to write mesh with " << MeshType::dimensions
+ << "dimensions but VTK legacy format supports only 1D, 2D and 3D meshes." << endl;
+ return false;
+ }
+ fstream outputFile;
+ outputFile.open( fileName.getString(), ios::out );
+ if( ! outputFile )
+ {
+ cerr << "I am not able to open the output file " << fileName << "." << endl;
+ return false;
+ }
+ outputFile << setprecision( 6 );
+ outputFile << fixed;
+
+ if( ! writeHeader( outputFile, mesh ) )
+ return false;
+ }
+
+ template< typename MeshType >
+ static bool writeHeader( ostream& file,
+ MeshType& mesh,
+ bool verbose )
+ {
+ file << "# vtk DataFile Version 2.0\n";
+ file << m_name << "\n";
+ file << "ASCII\n";
+ file << "DATASET UNSTRUCTURED_GRID\n";
+ file << "\n";
+ }
+
+
+};
+
+
+
+#endif /* TNLMESHWRITERVTKLEGACY_H_ */
diff --git a/tools/src/tnl-mesh-convert.h b/tools/src/tnl-mesh-convert.h
index 8d6d9b48fe..9b4d5556eb 100644
--- a/tools/src/tnl-mesh-convert.h
+++ b/tools/src/tnl-mesh-convert.h
@@ -22,6 +22,7 @@
#include <mesh/tnlMeshReaderNetgen.h>
#include <mesh/config/tnlMeshConfigBase.h>
#include <mesh/topologies/tnlMeshTriangleTag.h>
+#include <mesh/topologies/tnlMeshTetrahedronTag.h>
#include <mesh/tnlMesh.h>
#include <mesh/tnlMeshInitializer.h>
#include <core/mfilename.h>
@@ -42,12 +43,14 @@ bool readMeshWithDimensions( const tnlParameterContainer& parameters )
if( fileExt == "ng" &&
! tnlMeshReaderNetgen::readMesh<>( inputFileName, mesh, true ) )
return false;
- //if( ! tnlMeshInitializer< MeshConfig >::initMesh( mesh ) )
- // return false;
+ tnlMeshInitializer< MeshConfig > meshInitializer;
+ meshInitializer.setVerbose( true );
+ if( ! meshInitializer.initMesh( mesh ) )
+ return false;
tnlString outputFile;
if( parameters.GetParameter< tnlString >( "output-file", outputFile ) )
{
- cout << "Writing the mesh to the file " << outputFile << "." << endl;
+ cout << "Writing the 2D mesh to the file " << outputFile << "." << endl;
if( ! mesh.save( outputFile ) )
{
cerr << "I am not able to safe the mesh into the file " << outputFile << "." << endl;
@@ -55,6 +58,32 @@ bool readMeshWithDimensions( const tnlParameterContainer& parameters )
}
}
}
+ if( Dimensions == 3 )
+ {
+ struct MeshConfig : public tnlMeshConfigBase< 3 >
+ {
+ typedef tnlMeshTetrahedronTag CellTag;
+ };
+ tnlMesh< MeshConfig > mesh;
+ if( fileExt == "ng" &&
+ ! tnlMeshReaderNetgen::readMesh<>( inputFileName, mesh, true ) )
+ return false;
+ tnlMeshInitializer< MeshConfig > meshInitializer;
+ meshInitializer.setVerbose( true );
+ if( ! meshInitializer.initMesh( mesh ) )
+ return false;
+ tnlString outputFile;
+ if( parameters.GetParameter< tnlString >( "output-file", outputFile ) )
+ {
+ cout << "Writing the 3D mesh to the file " << outputFile << "." << endl;
+ if( ! mesh.save( outputFile ) )
+ {
+ cerr << "I am not able to safe the mesh into the file " << outputFile << "." << endl;
+ return false;
+ }
+ }
+ }
+
return true;
}
--
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