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Commit 569e2b2f authored by Jakub Klinkovský's avatar Jakub Klinkovský
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Configuring linting with clang-format and clang-tidy

parent f89d5d93
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1 merge request!122Linting setup + code updates
......@@ -10,6 +10,7 @@ default:
- runner_system_failure
stages:
- lint
- build
- build:cuda
- build:gcc
......@@ -488,3 +489,58 @@ deploy documentation:
tags:
- docker
- deploy_key
clang-format:
stage: lint
# only:
# changes:
# - Documentation/**/*.{h,hpp,cpp,cu}
# - src/**/*.{h,hpp,cpp,cu}
script:
# TODO: replace "src/TNL" with "src"
- ./scripts/run-clang-format.py
--color always
--style file
--exclude "src/3rdparty/*"
--recursive
src/TNL Documentation
interruptible: true
# TODO: remove to enforce formatting
allow_failure: true
clang-tidy:
stage: lint
# only:
# changes:
# - Documentation/**/*.{h,hpp,cpp,cu}
# - src/**/*.{h,hpp,cpp,cu}
variables:
CXX: clang++
CC: clang
script:
# configure only to generate compile_commands.json
# TODO: set BUILD_EXAMPLES=yes to modernize examples
- cmake -B "./builddir/$CI_JOB_NAME" -S . -G Ninja
-DCMAKE_BUILD_TYPE=Debug
-DWITH_OPENMP=yes
-DWITH_MPI=yes
-DWITH_CUDA=no
-DBUILD_TESTS=yes
-DBUILD_MATRIX_TESTS=yes
-DBUILD_DOC=yes
-DBUILD_BENCHMARKS=yes
-DBUILD_EXAMPLES=no
-DBUILD_TOOLS=yes
-DBUILD_PYTHON=yes
-DWITH_CI_FLAGS=yes
# cmake creates compile_commands.json only on the second run, WTF!?
- cmake -B "./builddir/$CI_JOB_NAME" -S . -G Ninja
- ls -lah "./builddir/$CI_JOB_NAME"
# run-clang-tidy is weird compared to run-clang-format.py:
# - clang-tidy is not executed on header files, but on source files
# - the positional arguments are regexes filtering sources from the compile_commands.json
# - the -header-filter option (or HeaderFilterRegex in the config) allows to filter header files
- run-clang-tidy -p "./builddir/$CI_JOB_NAME" ".*"
interruptible: true
# TODO: remove to enforce
allow_failure: true
......@@ -318,7 +318,7 @@ endif()
set( CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin )
set( CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib )
include_directories( src )
include_directories( src/3rdparty )
include_directories( SYSTEM src/3rdparty )
# Add all subdirectories
add_subdirectory( src )
......@@ -331,6 +331,10 @@ if( ${BUILD_DOC} )
add_subdirectory( Documentation/Tutorials )
endif()
# export compile_commands.json so it can be used by Clang tools
# https://clang.llvm.org/docs/JSONCompilationDatabase.html
set( CMAKE_EXPORT_COMPILE_COMMANDS ON CACHE INTERNAL "" )
set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "Template Numerical Library")
set(CPACK_PACKAGE_VENDOR "MMG")
#set(CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/ReadMe.txt")
......
../src/.clang-format
\ No newline at end of file
#!/bin/bash
# Copyright (c) 2017, Medicine Yeh
# MIT License
# Upstream page: https://github.com/MedicineYeh/p-clang-format
# Local modifications:
# - https://github.com/MedicineYeh/p-clang-format/pull/2
# - CUDA_CHEVRON_* hack to protect "<<<" and ">>>" from clang-format
# (see https://github.com/llvm/llvm-project/issues/52881)
# Turn on this to replace any pragma
#REPLACE_ANY_PRAGMA=1
function replace_all()
{
local prefix="$1"
local keywords=("${!2}")
local pattern="$3"
local file_pathes=("${!4}")
# echo "Keywords : ${keywords[*]}"
# echo "Pattern : ${pattern}"
# echo "File Path : ${file_pathes[*]}"
for file_path in "${file_pathes[@]}"; do
[[ ! -r "$file_path" ]] && continue
for w in "${keywords[@]}"; do
# echo "Replace '${prefix}$w' in '$file_path'"
sed -i "s/${prefix}${w}/${pattern}${prefix}${w}/g" "${file_path}"
done
# HACK: protect "<<<" and ">>>" from clang-format
sed -i "s/<<</CUDA_CHEVRON_OPEN/g" "${file_path}"
sed -i "s/>>>/CUDA_CHEVRON_CLOSE/g" "${file_path}"
done
}
function re_replace_all()
{
local prefix="$1"
local keywords=("${!2}")
local pattern="$3"
local file_pathes=("${!4}")
# echo "Keywords : ${keywords[*]}"
# echo "Anti-Pattern : ${pattern}"
# echo "File Path : ${file_pathes[*]}"
for file_path in "${file_pathes[@]}"; do
[[ ! -r "$file_path" ]] && continue
for w in "${keywords[@]}"; do
# echo "Re:replace '${prefix}$w' in '$file_path'"
sed -i "s/${pattern}${prefix}${w}/${prefix}${w}/g" "${file_path}"
done
# HACK: unprotect "<<<" and ">>>"
sed -i "s/CUDA_CHEVRON_OPEN/<<</g" "${file_path}"
sed -i "s/CUDA_CHEVRON_CLOSE/>>>/g" "${file_path}"
done
}
function format()
{
clang-format "$@"
}
function main()
{
# This is the pattern for replacing to comments
local comment_pattern="\/\/"
# This is the pattern for replacing comments back to original string
local re_comment_pattern="\/\/ *"
# The path of files
local file_pathes=()
# Define the keywords of pragma to be escaped from formatting
local pragma_prefix="#pragma "
local pragma_key_words=()
# Loop specific
pragma_key_words+=(omp simd loop unroll ivdep vector)
# Memory specific
pragma_key_words+=(alloc_section)
# Misc.
pragma_key_words+=("cilk grainsize" offload)
# Turn on the following line to indent any pragma
[[ "$REPLACE_ANY_PRAGMA" == "1" ]] && pragma_key_words=("")
# Find all files in the arguments
for var in "$@"; do
if [[ ! "$var" =~ ^-.* ]]; then
file_pathes+=("$var")
fi
done
# Create and trap a temporary file
tmpfile=$(mktemp --tmpdir="${TMPDIR:-/tmp}" p-clang-format.XXXXXXXXXX)
trap 'rm -f -- "$tmpfile"' INT TERM HUP EXIT
# Append the temporary file to file_pathes so pragmas will be replaced in it
# (this handles the case when the user did not specify -i to edit files in-place)
file_pathes+=("$tmpfile")
# Replace "#pragma" -> "//#pragma" in the files
replace_all "$pragma_prefix" "pragma_key_words[@]" "$comment_pattern" "file_pathes[@]"
# Run clang-format and redirect its output to the $tmpfile
format "$@" > "$tmpfile"
# Replace "//#pragma" -> "#pragma" in the files
re_replace_all "$pragma_prefix" "pragma_key_words[@]" "$re_comment_pattern" "file_pathes[@]"
# Show the clang-format's stdout after replacement
cat "$tmpfile"
}
main "$@"
#!/usr/bin/env python
"""A wrapper script around clang-format, suitable for linting multiple files
and to use for continuous integration.
This is an alternative API for the clang-format command line.
It runs over multiple files and directories in parallel.
A diff output is produced and a sensible exit code is returned.
Upstream page: https://github.com/Sarcasm/run-clang-format
Local modifications:
- DEFAULT_CLANG_FORMAT_EXECUTABLE, p-clang-format
"""
from __future__ import print_function, unicode_literals
import argparse
import codecs
import difflib
import fnmatch
import io
import errno
import multiprocessing
import os
import signal
import subprocess
import sys
import traceback
from functools import partial
try:
from subprocess import DEVNULL # py3k
except ImportError:
DEVNULL = open(os.devnull, "wb")
DEFAULT_EXTENSIONS = 'c,h,C,H,cpp,hpp,cc,hh,c++,h++,cxx,hxx'
DEFAULT_CLANG_FORMAT_IGNORE = '.clang-format-ignore'
# use a wrapper script which formats #pragmas nicely
_p_clang_format = os.path.join(os.path.dirname(__file__), "p-clang-format")
if os.path.isfile(_p_clang_format):
DEFAULT_CLANG_FORMAT_EXECUTABLE = _p_clang_format
else:
DEFAULT_CLANG_FORMAT_EXECUTABLE = 'clang-format'
class ExitStatus:
SUCCESS = 0
DIFF = 1
TROUBLE = 2
def excludes_from_file(ignore_file):
excludes = []
try:
with io.open(ignore_file, 'r', encoding='utf-8') as f:
for line in f:
if line.startswith('#'):
# ignore comments
continue
pattern = line.rstrip()
if not pattern:
# allow empty lines
continue
excludes.append(pattern)
except EnvironmentError as e:
if e.errno != errno.ENOENT:
raise
return excludes;
def list_files(files, recursive=False, extensions=None, exclude=None):
if extensions is None:
extensions = []
if exclude is None:
exclude = []
out = []
for file in files:
if recursive and os.path.isdir(file):
for dirpath, dnames, fnames in os.walk(file):
fpaths = [os.path.join(dirpath, fname) for fname in fnames]
for pattern in exclude:
# os.walk() supports trimming down the dnames list
# by modifying it in-place,
# to avoid unnecessary directory listings.
dnames[:] = [
x for x in dnames
if
not fnmatch.fnmatch(os.path.join(dirpath, x), pattern)
]
fpaths = [
x for x in fpaths if not fnmatch.fnmatch(x, pattern)
]
for f in fpaths:
ext = os.path.splitext(f)[1][1:]
if ext in extensions:
out.append(f)
else:
out.append(file)
return out
def make_diff(file, original, reformatted):
return list(
difflib.unified_diff(
original,
reformatted,
fromfile='{}\t(original)'.format(file),
tofile='{}\t(reformatted)'.format(file),
n=3))
class DiffError(Exception):
def __init__(self, message, errs=None):
super(DiffError, self).__init__(message)
self.errs = errs or []
class UnexpectedError(Exception):
def __init__(self, message, exc=None):
super(UnexpectedError, self).__init__(message)
self.formatted_traceback = traceback.format_exc()
self.exc = exc
def run_clang_format_diff_wrapper(args, file):
try:
ret = run_clang_format_diff(args, file)
return ret
except DiffError:
raise
except Exception as e:
raise UnexpectedError('{}: {}: {}'.format(file, e.__class__.__name__,
e), e)
def run_clang_format_diff(args, file):
try:
with io.open(file, 'r', encoding='utf-8') as f:
original = f.readlines()
except IOError as exc:
raise DiffError(str(exc))
if args.in_place:
invocation = [args.clang_format_executable, '-i', file]
else:
invocation = [args.clang_format_executable, file]
if args.style:
invocation.extend(['--style', args.style])
if args.dry_run:
print(" ".join(invocation))
return [], []
# Use of utf-8 to decode the process output.
#
# Hopefully, this is the correct thing to do.
#
# It's done due to the following assumptions (which may be incorrect):
# - clang-format will returns the bytes read from the files as-is,
# without conversion, and it is already assumed that the files use utf-8.
# - if the diagnostics were internationalized, they would use utf-8:
# > Adding Translations to Clang
# >
# > Not possible yet!
# > Diagnostic strings should be written in UTF-8,
# > the client can translate to the relevant code page if needed.
# > Each translation completely replaces the format string
# > for the diagnostic.
# > -- http://clang.llvm.org/docs/InternalsManual.html#internals-diag-translation
#
# It's not pretty, due to Python 2 & 3 compatibility.
encoding_py3 = {}
if sys.version_info[0] >= 3:
encoding_py3['encoding'] = 'utf-8'
try:
proc = subprocess.Popen(
invocation,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
universal_newlines=True,
**encoding_py3)
except OSError as exc:
raise DiffError(
"Command '{}' failed to start: {}".format(
subprocess.list2cmdline(invocation), exc
)
)
proc_stdout = proc.stdout
proc_stderr = proc.stderr
if sys.version_info[0] < 3:
# make the pipes compatible with Python 3,
# reading lines should output unicode
encoding = 'utf-8'
proc_stdout = codecs.getreader(encoding)(proc_stdout)
proc_stderr = codecs.getreader(encoding)(proc_stderr)
# hopefully the stderr pipe won't get full and block the process
outs = list(proc_stdout.readlines())
errs = list(proc_stderr.readlines())
proc.wait()
if proc.returncode:
raise DiffError(
"Command '{}' returned non-zero exit status {}".format(
subprocess.list2cmdline(invocation), proc.returncode
),
errs,
)
if args.in_place:
return [], errs
return make_diff(file, original, outs), errs
def bold_red(s):
return '\x1b[1m\x1b[31m' + s + '\x1b[0m'
def colorize(diff_lines):
def bold(s):
return '\x1b[1m' + s + '\x1b[0m'
def cyan(s):
return '\x1b[36m' + s + '\x1b[0m'
def green(s):
return '\x1b[32m' + s + '\x1b[0m'
def red(s):
return '\x1b[31m' + s + '\x1b[0m'
for line in diff_lines:
if line[:4] in ['--- ', '+++ ']:
yield bold(line)
elif line.startswith('@@ '):
yield cyan(line)
elif line.startswith('+'):
yield green(line)
elif line.startswith('-'):
yield red(line)
else:
yield line
def print_diff(diff_lines, use_color):
if use_color:
diff_lines = colorize(diff_lines)
if sys.version_info[0] < 3:
sys.stdout.writelines((l.encode('utf-8') for l in diff_lines))
else:
sys.stdout.writelines(diff_lines)
def print_trouble(prog, message, use_colors):
error_text = 'error:'
if use_colors:
error_text = bold_red(error_text)
print("{}: {} {}".format(prog, error_text, message), file=sys.stderr)
def main():
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument(
'--clang-format-executable',
metavar='EXECUTABLE',
help='path to the clang-format executable',
default=DEFAULT_CLANG_FORMAT_EXECUTABLE)
parser.add_argument(
'--extensions',
help='comma separated list of file extensions (default: {})'.format(
DEFAULT_EXTENSIONS),
default=DEFAULT_EXTENSIONS)
parser.add_argument(
'-r',
'--recursive',
action='store_true',
help='run recursively over directories')
parser.add_argument(
'-d',
'--dry-run',
action='store_true',
help='just print the list of files')
parser.add_argument(
'-i',
'--in-place',
action='store_true',
help='format file instead of printing differences')
parser.add_argument('files', metavar='file', nargs='+')
parser.add_argument(
'-q',
'--quiet',
action='store_true',
help="disable output, useful for the exit code")
parser.add_argument(
'-j',
metavar='N',
type=int,
default=0,
help='run N clang-format jobs in parallel'
' (default number of cpus + 1)')
parser.add_argument(
'--color',
default='auto',
choices=['auto', 'always', 'never'],
help='show colored diff (default: auto)')
parser.add_argument(
'-e',
'--exclude',
metavar='PATTERN',
action='append',
default=[],
help='exclude paths matching the given glob-like pattern(s)'
' from recursive search')
parser.add_argument(
'--style',
help='formatting style to apply (LLVM, Google, Chromium, Mozilla, WebKit)')
args = parser.parse_args()
# use default signal handling, like diff return SIGINT value on ^C
# https://bugs.python.org/issue14229#msg156446
signal.signal(signal.SIGINT, signal.SIG_DFL)
try:
signal.SIGPIPE
except AttributeError:
# compatibility, SIGPIPE does not exist on Windows
pass
else:
signal.signal(signal.SIGPIPE, signal.SIG_DFL)
colored_stdout = False
colored_stderr = False
if args.color == 'always':
colored_stdout = True
colored_stderr = True
elif args.color == 'auto':
colored_stdout = sys.stdout.isatty()
colored_stderr = sys.stderr.isatty()
version_invocation = [args.clang_format_executable, str("--version")]
try:
subprocess.check_call(version_invocation, stdout=DEVNULL)
except subprocess.CalledProcessError as e:
print_trouble(parser.prog, str(e), use_colors=colored_stderr)
return ExitStatus.TROUBLE
except OSError as e:
print_trouble(
parser.prog,
"Command '{}' failed to start: {}".format(
subprocess.list2cmdline(version_invocation), e
),
use_colors=colored_stderr,
)
return ExitStatus.TROUBLE
retcode = ExitStatus.SUCCESS
excludes = excludes_from_file(DEFAULT_CLANG_FORMAT_IGNORE)
excludes.extend(args.exclude)
files = list_files(
args.files,
recursive=args.recursive,
exclude=excludes,
extensions=args.extensions.split(','))
if not files:
return
njobs = args.j
if njobs == 0:
njobs = multiprocessing.cpu_count() + 1
njobs = min(len(files), njobs)
if njobs == 1:
# execute directly instead of in a pool,
# less overhead, simpler stacktraces
it = (run_clang_format_diff_wrapper(args, file) for file in files)
pool = None
else:
pool = multiprocessing.Pool(njobs)
it = pool.imap_unordered(
partial(run_clang_format_diff_wrapper, args), files)
pool.close()
while True:
try:
outs, errs = next(it)
except StopIteration:
break
except DiffError as e:
print_trouble(parser.prog, str(e), use_colors=colored_stderr)
retcode = ExitStatus.TROUBLE
sys.stderr.writelines(e.errs)
except UnexpectedError as e:
print_trouble(parser.prog, str(e), use_colors=colored_stderr)
sys.stderr.write(e.formatted_traceback)
retcode = ExitStatus.TROUBLE
# stop at the first unexpected error,
# something could be very wrong,
# don't process all files unnecessarily
if pool:
pool.terminate()
break
else:
sys.stderr.writelines(errs)
if outs == []:
continue
if not args.quiet:
print_diff(outs, use_color=colored_stdout)
if retcode == ExitStatus.SUCCESS:
retcode = ExitStatus.DIFF
if pool:
pool.join()
return retcode
if __name__ == '__main__':
sys.exit(main())
# Documentation: https://clang.llvm.org/docs/ClangFormatStyleOptions.html
---
Language: Cpp
Standard: c++14
#BasedOnStyle: Mozilla
# max line length
ColumnLimit: 128
IndentWidth: 3
ContinuationIndentWidth: 3
IndentAccessModifiers: false
AccessModifierOffset: -3
IndentCaseLabels: true
IndentCaseBlocks: true
IndentGotoLabels: false
IndentPPDirectives: BeforeHash
IndentExternBlock: NoIndent
IndentWrappedFunctionNames: false
NamespaceIndentation: None
FixNamespaceComments: true
CompactNamespaces: false
#ShortnamespaceLines: 10 # Clang 14
EmptyLineAfterAccessModifier: Never
EmptyLineBeforeAccessModifier: LogicalBlock
KeepEmptyLinesAtTheStartOfBlocks: false
MaxEmptyLinesToKeep: 1
SpacesInParentheses: true
SpacesInSquareBrackets: true
SpacesInAngles: Always
SpacesInConditionalStatement: true
SpacesInContainerLiterals: true
SpacesInCStyleCastParentheses: false
SpaceAfterCStyleCast: true
SpaceAfterLogicalNot: true
SpaceBeforeCtorInitializerColon: true
SpaceBeforeInheritanceColon: true
BitFieldColonSpacing: Both
SpaceBeforeParens: Never
SpaceBeforeRangeBasedForLoopColon: true
SpaceBeforeSquareBrackets: false
SpaceBeforeAssignmentOperators: true
SpaceBeforeCaseColon: false
SpaceBeforeCpp11BracedList: false
SpaceInEmptyBlock: false
SpaceInEmptyParentheses: false
SpacesBeforeTrailingComments: 2
Cpp11BracedListStyle: false
#PackConstructorInitializers: Never # Clang 14
AllowAllConstructorInitializersOnNextLine: false # deprecated
ConstructorInitializerAllOnOneLineOrOnePerLine: false # deprecated
ConstructorInitializerIndentWidth: 0
AlwaysBreakAfterReturnType: All
AlwaysBreakBeforeMultilineStrings: false
BreakBeforeBraces: Custom
BraceWrapping:
AfterCaseLabel: false
AfterClass: true
AfterControlStatement: MultiLine
AfterEnum: true
AfterFunction: true
AfterNamespace: false
AfterStruct: true
AfterUnion: true
AfterExternBlock: true
BeforeLambdaBody: true
BeforeCatch: true
BeforeElse: true
BeforeWhile: false
IndentBraces: false
SplitEmptyFunction: false
SplitEmptyRecord: false
SplitEmptyNamespace: true
BreakBeforeBinaryOperators: NonAssignment
BreakBeforeTernaryOperators: true
BreakInheritanceList: BeforeColon
BreakConstructorInitializers: BeforeColon
#BreakBeforeConceptDeclarations: true
#BreakStringLiterals: true
AlwaysBreakTemplateDeclarations: Yes
SpaceAfterTemplateKeyword: false
AlignAfterOpenBracket: Align
AlignArrayOfStructures: None
AlignConsecutiveMacros: None
AlignConsecutiveAssignments: None
AlignConsecutiveBitFields: None
AlignConsecutiveDeclarations: None
AlignEscapedNewlines: Left
AlignOperands: AlignAfterOperator
AlignTrailingComments: true
DerivePointerAlignment: false
PointerAlignment: Left
ReferenceAlignment: Pointer
# statement macros are typically formatted on their own lines
StatementMacros:
- __global__
- __host__
- __device__
- __cuda_callable__
AllowAllArgumentsOnNextLine: true
AllowAllParametersOfDeclarationOnNextLine: false
AllowShortEnumsOnASingleLine: true
AllowShortBlocksOnASingleLine: Never
AllowShortCaseLabelsOnASingleLine: false
AllowShortFunctionsOnASingleLine: Inline
AllowShortLambdasOnASingleLine: Empty
AllowShortIfStatementsOnASingleLine: Never
AllowShortLoopsOnASingleLine: false
BinPackArguments: false
BinPackParameters: false
#CommentPragmas: '^ IWYU pragma:'
#IncludeBlocks: Preserve
#IncludeCategories:
# - Regex: '^"(llvm|llvm-c|clang|clang-c)/'
# Priority: 2
# SortPriority: 0
# CaseSensitive: false
# - Regex: '^(<|"(gtest|gmock|isl|json)/)'
# Priority: 3
# SortPriority: 0
# CaseSensitive: false
# - Regex: '.*'
# Priority: 1
# SortPriority: 0
# CaseSensitive: false
#IncludeIsMainRegex: '(Test)?$'
#IncludeIsMainSourceRegex: ''
#PenaltyBreakAssignment: 2
#PenaltyBreakBeforeFirstCallParameter: 19
#PenaltyBreakComment: 300
#PenaltyBreakFirstLessLess: 120
#PenaltyBreakString: 1000
#PenaltyBreakTemplateDeclaration: 10
PenaltyExcessCharacter: 500
#PenaltyIndentedWhitespace: 0
#PPIndentWidth: -1
#SortIncludes: CaseSensitive
#SortUsingDeclarations: true
# FIXME: sorting includes causes a lot of breakage due to cyclic inclusion problems
SortIncludes: Never
# NOTE: disabling this option breaks indentation of comments, see https://github.com/llvm/llvm-project/issues/53425
ReflowComments: true
...
# vim: ft=yaml
# Documentation: https://clang.llvm.org/extra/clang-tidy/
---
HeaderFilterRegex: '.*'
AnalyzeTemporaryDtors: false
FormatStyle: file
User: user
Checks: 'readability-*,
-readability-else-after-return,
-readability-named-parameter,
modernize-*,
-modernize-avoid-c-arrays,
-modernize-use-trailing-return-type,
-modernize-raw-string-literal,
performance-*,
mpi-*'
WarningsAsErrors: 'performance-*,mpi-*'
CheckOptions:
- key: readability-braces-around-statements.ShortStatementLines
value: 99
- key: readability-function-size.LineThreshold
value: 64
- key: readability-function-size.ParameterThreshold
value: 15
- key: readability-magic-numbers.IgnoreAllFloatingPointValues
value: true
- key: readability-magic-numbers.IgnorePowersOf2IntegerValues
value: true
- key: modernize-use-default-member-init.UseAssignment
value: true
- key: modernize-use-auto.MinTypeNameLength
value: 10
- key: cppcoreguidelines-pro-type-member-init.UseAssignment
value: true
...
# vim: ft=yaml
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