Jakub Klinkovský authored Dec 25, 2021 and Jakub Klinkovský committed Jan 10, 2022

The old headers were hard to maintain, inconsistent and contained
useless information:

- file name (useless, prone to inconsistencies upon renaming)
- "description" (useless placeholder that was likely intended to be
  replaced by the user, not to be used literally)
- "begin" date for each file (prone to inconsistencies and copy-paste
  errors, the information can be found in git)
- "copyright" notice (inconsistent years)
- "email" (replaced with a project link in the new template)
- "Copyright Notice" referring to an obsolete file (tnl/Copyright) that
  does not exist anymore

The new template consists of three simple parts:

- copyright notice with updatable years related to the whole project
- project name and website URL
- SPDX license identifier

Note that the SPDX license identifier must be on a line that starts with
either "//" or "/*", so we can't use a block comment (/* ... */) for the
whole header. But using "//" for block comments is common too.

Jakub Klinkovský authored Dec 25, 2021 and Jakub Klinkovský committed Jan 10, 2022

Copyright headers in these files are useless, since they are not
distributed on the user's when they install TNL. They were also outdated
and inconsistent.

Documentation: fixed links between markdown files

See merge request !119

Doxygen changed their way of naming HTML files converted from Markdown
in the 1.9.3 release, but linking to other Markdown files is now
supported natively. No need for links to .html and the \page macro at
the top of each Markdown page.

Mesh followup

See merge request !117

It is broken and does not actually check anything.

Optimized mesh initialization by skipping entities which are completely disabled in the configuration

Added options to force the output RealType and GlobalIndexType in tnl-mesh-converter and tnl-refine-mesh

The example should be the same for both .cpp and .cu, otherwise the
output might be inconsistent (e.g. when .cpp is included, but .cu is
compiled and its output is used).

Fixed Jacobi and SOR so that code using getLinearSolver() and a distributed matrix can be compiled (even if the solvers do not work...)