Fixes #62

Moved common headers from Benchmarks to TNL/Benchmarks so they can be used in other projects more easily

The performance on 16 cores is about the same as before, but it takes
significantly less tasks so it should be much faster on less cores.

The build time improved from 4:48 to 1:43 on 16 cores, so the efficiency
is not great, but it's still better than nothing. Maybe the benchmarks
could be reorganized into more independent tasks that could be
explicitly instantiated more efficiently (even if there would be less
explicit instantiations eventually).

Instead of writing the whole log as a valid JSON object, it is much
easier to write one JSON object per line. This can be processed in
Python with the Pandas package using the following code:

df = pandas.read_json(open("foo.log", "r"), orient="records", lines=True)

Also removed the outputMode parameter from the Benchmark and Logging
classes, since it was pretty useless.

Benchmarks: performed loops are returned via the BenchmarkResults struct, base-time via the getBaseTime method

The log should be written to the file in all modes, not only when
logFileAppend is true.

Specifying the widths using pairs is just ugly and backwards
incompatible. Changed to specifying using two vectors.

Mesh configuration refactoring

See merge request !106

Storage of subentities, superentities and tags is configured by
dimension rather than entity topology.

TO/matrices-adaptive-csr

Closes #83

See merge request !105