Adding documentation.

/Release

/Testing

/CMakeLists.txt.user

/doc/_build

# Makefile for Sphinx documentation

#

# You can set these variables from the command line.

SPHINXOPTS    =

SPHINXBUILD   = sphinx-build

PAPER         =

BUILDDIR      = _build

# User-friendly check for sphinx-build

ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)

$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)

endif

# Internal variables.

PAPEROPT_a4     = -D latex_paper_size=a4

PAPEROPT_letter = -D latex_paper_size=letter

ALLSPHINXOPTS   = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

# the i18n builder cannot share the environment and doctrees with the others

I18NSPHINXOPTS  = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .

.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext

help:

	@echo "Please use \`make <target>' where <target> is one of"

	@echo "  html       to make standalone HTML files"

	@echo "  dirhtml    to make HTML files named index.html in directories"

	@echo "  singlehtml to make a single large HTML file"

	@echo "  pickle     to make pickle files"

	@echo "  json       to make JSON files"

	@echo "  htmlhelp   to make HTML files and a HTML help project"

	@echo "  qthelp     to make HTML files and a qthelp project"

	@echo "  devhelp    to make HTML files and a Devhelp project"

	@echo "  epub       to make an epub"

	@echo "  latex      to make LaTeX files, you can set PAPER=a4 or PAPER=letter"

	@echo "  latexpdf   to make LaTeX files and run them through pdflatex"

	@echo "  latexpdfja to make LaTeX files and run them through platex/dvipdfmx"

	@echo "  text       to make text files"

	@echo "  man        to make manual pages"

	@echo "  texinfo    to make Texinfo files"

	@echo "  info       to make Texinfo files and run them through makeinfo"

	@echo "  gettext    to make PO message catalogs"

	@echo "  changes    to make an overview of all changed/added/deprecated items"

	@echo "  xml        to make Docutils-native XML files"

	@echo "  pseudoxml  to make pseudoxml-XML files for display purposes"

	@echo "  linkcheck  to check all external links for integrity"

	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"

clean:

	rm -rf $(BUILDDIR)/*

html:

	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html

	@echo

	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."

dirhtml:

	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml

	@echo

	@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."

singlehtml:

	$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml

	@echo

	@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."

pickle:

	$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle

	@echo

	@echo "Build finished; now you can process the pickle files."

json:

	$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json

	@echo

	@echo "Build finished; now you can process the JSON files."

htmlhelp:

	$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp

	@echo

	@echo "Build finished; now you can run HTML Help Workshop with the" \

	      ".hhp project file in $(BUILDDIR)/htmlhelp."

qthelp:

	$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp

	@echo

	@echo "Build finished; now you can run "qcollectiongenerator" with the" \

	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"

	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/TNL.qhcp"

	@echo "To view the help file:"

	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/TNL.qhc"

devhelp:

	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp

	@echo

	@echo "Build finished."

	@echo "To view the help file:"

	@echo "# mkdir -p $$HOME/.local/share/devhelp/TNL"

	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/TNL"

	@echo "# devhelp"

epub:

	$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub

	@echo

	@echo "Build finished. The epub file is in $(BUILDDIR)/epub."

latex:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo

	@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."

	@echo "Run \`make' in that directory to run these through (pdf)latex" \

	      "(use \`make latexpdf' here to do that automatically)."

latexpdf:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo "Running LaTeX files through pdflatex..."

	$(MAKE) -C $(BUILDDIR)/latex all-pdf

	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."

latexpdfja:

	$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex

	@echo "Running LaTeX files through platex and dvipdfmx..."

	$(MAKE) -C $(BUILDDIR)/latex all-pdf-ja

	@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."

text:

	$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text

	@echo

	@echo "Build finished. The text files are in $(BUILDDIR)/text."

man:

	$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man

	@echo

	@echo "Build finished. The manual pages are in $(BUILDDIR)/man."

texinfo:

	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo

	@echo

	@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."

	@echo "Run \`make' in that directory to run these through makeinfo" \

	      "(use \`make info' here to do that automatically)."

info:

	$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo

	@echo "Running Texinfo files through makeinfo..."

	make -C $(BUILDDIR)/texinfo info

	@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."

gettext:

	$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale

	@echo

	@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."

changes:

	$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes

	@echo

	@echo "The overview file is in $(BUILDDIR)/changes."

linkcheck:

	$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck

	@echo

	@echo "Link check complete; look for any errors in the above output " \

	      "or in $(BUILDDIR)/linkcheck/output.txt."

doctest:

	$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest

	@echo "Testing of doctests in the sources finished, look at the " \

	      "results in $(BUILDDIR)/doctest/output.txt."

xml:

	$(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml

	@echo

	@echo "Build finished. The XML files are in $(BUILDDIR)/xml."

pseudoxml:

	$(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml

	@echo

	@echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."

# -*- coding: utf-8 -*-

#

# TNL documentation build configuration file, created by

# sphinx-quickstart on Sun Mar 29 13:12:39 2015.

#

# This file is execfile()d with the current directory set to its

# containing dir.

#

# Note that not all possible configuration values are present in this

# autogenerated file.

#

# All configuration values have a default; values that are commented out

# serve to show the default.

import sys

import os

# If extensions (or modules to document with autodoc) are in another directory,

# add these directories to sys.path here. If the directory is relative to the

# documentation root, use os.path.abspath to make it absolute, like shown here.

#sys.path.insert(0, os.path.abspath('.'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.

#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be

# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom

# ones.

extensions = [

    'sphinx.ext.coverage',

    'sphinx.ext.mathjax',

]

# Add any paths that contain templates here, relative to this directory.

templates_path = ['_templates']

# The suffix of source filenames.

source_suffix = '.rst'

# The encoding of source files.

#source_encoding = 'utf-8-sig'

# The master toctree document.

master_doc = 'index'

# General information about the project.

project = u'TNL'

copyright = u'2015, Tomáš Oberhuber'

# The version info for the project you're documenting, acts as replacement for

# |version| and |release|, also used in various other places throughout the

# built documents.

#

# The short X.Y version.

version = '0.1'

# The full version, including alpha/beta/rc tags.

release = '0.1'

# The language for content autogenerated by Sphinx. Refer to documentation

# for a list of supported languages.

#language = None

# There are two options for replacing |today|: either, you set today to some

# non-false value, then it is used:

#today = ''

# Else, today_fmt is used as the format for a strftime call.

#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and

# directories to ignore when looking for source files.

exclude_patterns = ['_build']

# The reST default role (used for this markup: `text`) to use for all

# documents.

#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.

#add_function_parentheses = True

# If true, the current module name will be prepended to all description

# unit titles (such as .. function::).

#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the

# output. They are ignored by default.

#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.

pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.

#modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.

#keep_warnings = False

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for

# a list of builtin themes.

html_theme = 'default'

# Theme options are theme-specific and customize the look and feel of a theme

# further.  For a list of options available for each theme, see the

# documentation.

#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.

#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to

# "<project> v<release> documentation".

#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.

#html_short_title = None

# The name of an image file (relative to this directory) to place at the top

# of the sidebar.

#html_logo = None

# The name of an image file (within the static path) to use as favicon of the

# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32

# pixels large.

#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,

# relative to this directory. They are copied after the builtin static files,

# so a file named "default.css" will overwrite the builtin "default.css".

html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or

# .htaccess) here, relative to this directory. These files are copied

# directly to the root of the documentation.

#html_extra_path = []

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,

# using the given strftime format.

#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to

# typographically correct entities.

#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.

#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to

# template names.

#html_additional_pages = {}

# If false, no module index is generated.

#html_domain_indices = True

# If false, no index is generated.

#html_use_index = True

# If true, the index is split into individual pages for each letter.

#html_split_index = False

# If true, links to the reST sources are added to the pages.

#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.

#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.

#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will

# contain a <link> tag referring to it.  The value of this option must be the

# base URL from which the finished HTML is served.

#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").

#html_file_suffix = None

# Output file base name for HTML help builder.

htmlhelp_basename = 'TNLdoc'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {

# The paper size ('letterpaper' or 'a4paper').

#'papersize': 'letterpaper',

# The font size ('10pt', '11pt' or '12pt').

#'pointsize': '10pt',

# Additional stuff for the LaTeX preamble.

#'preamble': '',

}

# Grouping the document tree into LaTeX files. List of tuples

# (source start file, target name, title,

#  author, documentclass [howto, manual, or own class]).

latex_documents = [

  ('index', 'TNL.tex', u'TNL Documentation',

   u'Tomáš Oberhuber', 'manual'),

]

# The name of an image file (relative to this directory) to place at the top of

# the title page.

#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,

# not chapters.

#latex_use_parts = False

# If true, show page references after internal links.

#latex_show_pagerefs = False

# If true, show URL addresses after external links.

#latex_show_urls = False

# Documents to append as an appendix to all manuals.

#latex_appendices = []

# If false, no module index is generated.

#latex_domain_indices = True

# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples

# (source start file, name, description, authors, manual section).

man_pages = [

    ('index', 'tnl', u'TNL Documentation',

     [u'Tomáš Oberhuber'], 1)

]

# If true, show URL addresses after external links.

#man_show_urls = False

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples

# (source start file, target name, title, author,

#  dir menu entry, description, category)

texinfo_documents = [

  ('index', 'TNL', u'TNL Documentation',

   u'Tomáš Oberhuber', 'TNL', 'One line description of project.',

   'Miscellaneous'),

]

# Documents to append as an appendix to all manuals.

#texinfo_appendices = []

# If false, no module index is generated.

#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.

#texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.

#texinfo_no_detailmenu = False

# -- Options for Epub output ----------------------------------------------

# Bibliographic Dublin Core info.

epub_title = u'TNL'

epub_author = u'Tomáš Oberhuber'

epub_publisher = u'Tomáš Oberhuber'

epub_copyright = u'2015, Tomáš Oberhuber'

# The basename for the epub file. It defaults to the project name.

#epub_basename = u'TNL'

# The HTML theme for the epub output. Since the default themes are not optimized

# for small screen space, using the same theme for HTML and epub output is

# usually not wise. This defaults to 'epub', a theme designed to save visual

# space.

#epub_theme = 'epub'

# The language of the text. It defaults to the language option

# or en if the language is not set.

#epub_language = ''

# The scheme of the identifier. Typical schemes are ISBN or URL.

#epub_scheme = ''

# The unique identifier of the text. This can be a ISBN number

# or the project homepage.

#epub_identifier = ''

# A unique identification for the text.

#epub_uid = ''

# A tuple containing the cover image and cover page html template filenames.

#epub_cover = ()

# A sequence of (type, uri, title) tuples for the guide element of content.opf.

#epub_guide = ()

# HTML files that should be inserted before the pages created by sphinx.

# The format is a list of tuples containing the path and title.

#epub_pre_files = []

# HTML files shat should be inserted after the pages created by sphinx.

# The format is a list of tuples containing the path and title.

#epub_post_files = []

# A list of files that should not be packed into the epub file.

epub_exclude_files = ['search.html']

# The depth of the table of contents in toc.ncx.

#epub_tocdepth = 3

# Allow duplicate toc entries.

#epub_tocdup = True

# Choose between 'default' and 'includehidden'.

#epub_tocscope = 'default'

# Fix unsupported image types using the PIL.

#epub_fix_images = False

# Scale large images.

#epub_max_image_width = 0

# How to display URL addresses: 'footnote', 'no', or 'inline'.

#epub_show_urls = 'inline'

# If false, no index is generated.

#epub_use_index = True

.. TNL documentation master file, created by

   sphinx-quickstart on Sun Mar 29 13:12:39 2015.

   You can adapt this file completely to your liking, but it should at least

   contain the root `toctree` directive.

Welcome to TNL's documentation!

===============================

Contents:

.. toctree::

   :maxdepth: 2

   Introduction to TNL <intro>

   Installation <install>

   Users guid to PDE solvers <pde-solvers>

Indices and tables

==================

* :ref:`genindex`

* :ref:`modindex`

* :ref:`search`

============

Installation

============